| Name | Pos | Salary | Through | Years Left | Notes | Years in Majors |
| K. Wood | SP | $12,500,000 | 2010 | 2 years left | | 10 years |
| B. Roberts | 2B | $8,275,000 | 2011 | 3 years left | | 8 years |
| B. Jacobsen | 1B | $7,250,000 | 2010 | 2 years left | | 6 years |
| L. Carter | MR | $4,999,999 | 2009 | 1 years left | Free agent after this season! | 8 years |
| S. Kim | MR | $3,885,000 | 2009 | 1 years left | Free agent after this season! | 7 years |
| J. Bergmann | SP | $3,421,429 | 2009 | 1 years left | Arbitration (Estimate: $3,420,000) | 3 years |
| J. Cust | DH | $3,000,000 | 2011 | 3 years left | | 7 years |
| L. Matos | CF | $3,000,000 | 2011 | 3 years left | | 7 years |
| M. Lowe | MR | $2,445,714 | 2009 | 1 years left | Arbitration (Estimate: $3,060,000) | 3 years |
| S. Seabol | 3B | $1,342,857 | 2009 | 1 years left | Arbitration (Estimate: $890,000) | 4 years |
| C. Iannetta | C | $1,207,143 | 2009 | 1 years left | Arbitration (Estimate: $1,210,000) | 4 years |
| W. Bloomquist | SS | $999,999 | 2010 | 2 years left | | 7 years |
| R. Jorgensen | C | $999,999 | 2012 | 4 years left | | 1 years |
| T. Wellemeyer | CL | $954,286 | 2009 | 1 years left | Arbitration (Estimate: $1,190,000) | 4 years |
| N. Bumstead | SP | $735,714 | 2009 | 1 years left | Arbitration (Estimate: $740,000) | 3 years |
| G. Dobbs | 3B | $497,143 | 2009 | 1 years left | Arbitration (Estimate: $830,000) | 3 years |
| D. Haren | MR | $350,000 | 2009 | 1 years left | Arbitration (Estimate: $470,000) | 3 years |
| J. Duncan | LF | $340,000 | 2009 | 1 years left | Possible Arbitration, 150 more days of service needed this year. | 2 years |
| K. Tadano | MR | $300,000 | 2009 | 1 years left | Possible Arbitration, 47 more days of service needed this year. | 2 years |
| M. Lemanczyk | CF | $300,000 | 2009 | 1 years left | Possible Arbitration, 98 more days of service needed this year. | 2 years |
| B. Hart | 3B | $300,000 | 2009 | 1 years left | Possible Arbitration, 101 more days of service needed this year. | 2 years |
| N. Spears | SS | $300,000 | 2009 | 1 years left | Possible Arbitration, 172 more days of service needed this year. | 2 years |
| T. Lincecum | MR | $300,000 | 2009 | 1 years left | Automatic Resign. | 0 years |
| J. Blalock | RF | $300,000 | 2009 | 1 years left | Automatic Resign. | 1 years |
| L. Silva | RF | Minor-League-Contract | - | - | | 0 years |
| R. Pavlik | LF | Minor-League-Contract | - | - | | 0 years |
| D. Hatch | 2B | Minor-League-Contract | - | - | | 0 years |
| M. McMullan | SP | Minor-League-Contract | - | - | | 0 years |
| C. Columbus | 1B | Minor-League-Contract | - | - | | 0 years |
| J. Broxton | SP | Minor-League-Contract | - | - | | 0 years |
| P. Gomez | 2B | Minor-League-Contract | - | - | | 0 years |
| J. Minyard | MR | Minor-League-Contract | - | - | | 0 years |
| J. Seidel | SP | Minor-League-Contract | - | - | | 0 years |
| M. Vieira | MR | Minor-League-Contract | - | - | | 0 years |
| J. Coogan | MR | Minor-League-Contract | - | - | | 0 years |
| R. Wisner | 2B | Minor-League-Contract | - | - | | 0 years |
| J. Saltalamacchia | C | Minor-League-Contract | - | - | Minor League FA next year! | 0 years |
| D. Locascio | SP | Minor-League-Contract | - | - | | 0 years |
| J. Hughs | 3B | Minor-League-Contract | - | - | | 0 years |
| C. Lesser | LF | Minor-League-Contract | - | - | | 0 years |
| N. Espy | DH | Minor-League-Contract | - | - | | 1 years |
| L. Theile | 3B | Minor-League-Contract | - | - | | 0 years |
| M. Alvarado | C | Minor-League-Contract | - | - | | 0 years |
| R. Belizario | SP | Minor-League-Contract | - | - | | 0 years |
| C. Hernandez | MR | Minor-League-Contract | - | - | | 0 years |
| M. Fontenot | 2B | Minor-League-Contract | - | - | | 0 years |
| H. Randall | MR | Minor-League-Contract | - | - | | 0 years |
| T. Markray | SP | Minor-League-Contract | - | - | | 1 years |
| S. Reed | C | Minor-League-Contract | - | - | | 0 years |
| D. Portlock | C | Minor-League-Contract | - | - | | 0 years |
| E. Rojas | 2B | Minor-League-Contract | - | - | | 0 years |
| J. Guzman | SS | Minor-League-Contract | - | - | | 0 years |
| M. Newmark | 2B | Minor-League-Contract | - | - | | 0 years |
| B. Bohlae | CF | Minor-League-Contract | - | - | | 0 years |
| L. Grijalva | SP | Minor-League-Contract | - | - | | 0 years |
| C. Wu | C | Minor-League-Contract | - | - | Minor League FA next year! | 0 years |
| H. Made | SS | Minor-League-Contract | - | - | Minor League FA next year! | 0 years |
| B. Inzone | RF | Minor-League-Contract | - | - | | 0 years |
| W. Gonzales | LF | Minor-League-Contract | - | - | | 0 years |
| J. Powers | C | Minor-League-Contract | - | - | | 0 years |
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